1 commun gene

1.1 Gènes commun dans la signature IFN GSEA

## [1] "Sur les 308 gènes du gene set IFN, 4 sont dans les 5 gènes commun entre nanoString et le GWAS"
## [1] "OAS1"   "TYK2"   "IFNAR2" "JAK1"
## [1] "Sur les 308 gènes du gene set IFN, 7 sont dans le GWAS"
## [1] "OAS1"     "TYK2"     "IFNAR2"   "JAK1"     "TRIM46"   "IFNA10"   "HLA-DQA1"

1.2 Test stat

##      IFNAR2         IL10RB           JAK1           OAS1            TYK2     
##  Min.   :2056   Min.   :261.0   Min.   :1454   Min.   :  576   Min.   : 698  
##  1st Qu.:2765   1st Qu.:389.0   1st Qu.:2023   1st Qu.:  935   1st Qu.: 884  
##  Median :3069   Median :458.0   Median :2356   Median : 1288   Median :1010  
##  Mean   :3169   Mean   :459.4   Mean   :2347   Mean   : 4285   Mean   :1026  
##  3rd Qu.:3503   3rd Qu.:523.0   3rd Qu.:2650   3rd Qu.: 7463   3rd Qu.:1134  
##  Max.   :4863   Max.   :731.0   Max.   :3285   Max.   :20672   Max.   :1681  
##                                                                              
##       TBP        jours_prelevement  time_point        real_time_point
##  Min.   :444.0   1      :15        Length:117         REA: 0         
##  1st Qu.:611.0   9      :10        Class :character   T  : 7         
##  Median :653.0   2      : 9        Mode  :character   VT1:26         
##  Mean   :645.6   14     : 8                           VT2:32         
##  3rd Qu.:688.0   8      : 7                           VT3:25         
##  Max.   :814.0   21     : 7                           VT4:27         
##                  (Other):61                                          
##  condition_biologique     REA            numero_patient   REPONSE         
##  Length:117           Length:117         1      : 4     Length:117        
##  Class :character     Class :character   3      : 4     Class :character  
##  Mode  :character     Mode  :character   4      : 4     Mode  :character  
##                                          5      : 4                       
##                                          6      : 4                       
##                                          7      : 4                       
##                                          (Other):93
## [1] "IFNAR2"

## [1] "IL10RB"

## [1] "JAK1"

## [1] "OAS1"

## [1] "TYK2"

1.3 Test stat R vs RP à VT1/2/3/4

## [1] "IFNAR2"

## [1] "IL10RB"

## [1] "JAK1"

## [1] "OAS1"

## [1] "TYK2"

## [1] "IFNAR2"

## [1] "IL10RB"

## [1] "JAK1"

## [1] "OAS1"

## [1] "TYK2"

## [1] "IFNAR2"

## [1] "IL10RB"

## [1] "JAK1"

## [1] "OAS1"

## [1] "TYK2"

## [1] "IFNAR2"

## [1] "IL10RB"

## [1] "JAK1"

## [1] "OAS1"

## [1] "TYK2"

2 Other genes

2.1 Test stat VT

## [1] "IL6"

## [1] "IL6R"

## [1] "IL6ST"

## [1] "OAS1"

## [1] "OAS2"

## [1] "OAS3"

## [1] "OASL"

## [1] "RNASEL"

## [1] "PLCG2"

2.2 Test stat R vs RP à VT1/2/3/4

## [1] "IL6"

## [1] "IL6R"

## [1] "IL6ST"

## [1] "OAS1"

## [1] "OAS2"

## [1] "OAS3"

## [1] "OASL"

## [1] "RNASEL"

## [1] "PLCG2"

## [1] "IL6"

## [1] "IL6R"

## [1] "IL6ST"

## [1] "OAS1"

## [1] "OAS2"

## [1] "OAS3"

## [1] "OASL"

## [1] "RNASEL"

## [1] "PLCG2"

## [1] "IL6"

## [1] "IL6R"

## [1] "IL6ST"

## [1] "OAS1"

## [1] "OAS2"

## [1] "OAS3"

## [1] "OASL"

## [1] "RNASEL"

## [1] "PLCG2"

## [1] "IL6"

## [1] "IL6R"

## [1] "IL6ST"

## [1] "OAS1"

## [1] "OAS2"

## [1] "OAS3"

## [1] "OASL"

## [1] "RNASEL"

## [1] "PLCG2"